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UTSW study: RNA exosome key for B cell development

Findings explain immunodeficiency in rare syndrome and could offer new ways to treat autoimmune diseases

Nan Yan, Ph.D.

DALLAS – June 13, 2022 – New research from UT Southwestern suggests that RNA exosomes – the cellular machines that degrade old molecules of RNA – play a key role in the development of B cells, which are critical to the immune system’s ability to protect against infection. The findings, published in Science Immunology, explain why patients with rare mutations in a gene that codes for this machinery are often immunodeficient and could offer new approaches to treat autoimmune diseases.

“It was quite a surprise for us to find that this gene, whose role was well known as part of a disposal system for RNA, is also critical for a very important part of our immune system,” said study leader Nan Yan, Ph.D., Professor of Immunology and Microbiology at UT Southwestern and a member of the Harold C. Simmons Comprehensive Cancer Center.

Many patients with a rare disease tied to RNA exosome deficiency, known as trichohepatoenteric syndrome (THES), also develop B-cell immunodeficiency and experience recurrent infections. Although researchers have long known that THES is associated with mutations in exosome-encoding genes known as SKIV2L and TTC37, the molecular basis of the disease has been unknown.

Christian Wysocki, M.D., Ph.D.

To better understand the role of SKIV2L in THES, Dr. Yan’s research team in the Department of Immunology and colleagues at the Primary Immunodeficiency Clinic at UTSW and Children’s Medical Center Dallas studied a THES patient who carried this mutation and was part of a clinical research study led by Christian Wysocki, M.D., Ph.D., Associate Professor of Pediatrics. In addition to the usual clinical features of THES, a multi-organ disorder with symptoms including small size at birth, intractable diarrhea, distinctive “wooly” hair, and liver diseases, this patient had a severely low blood count of B cells.

Researchers then generated mice whose SKIV2L gene had been deleted in bone marrow stem cells that generate B cells. The animals also had B-cell deficiencies; further research showed that the B cells never matured because a key part of their development – in which progenitor cells randomly recombine genetic material to create a diverse B-cell pool – did not occur.

Hematoxylin and eosin staining of a Skiv2l-deficient mouse lymph node. A normal lymph node should have large, organized B cell follicles along the cortex (outer edge). The Skiv2l-deficient lymph node is devoid of B cells and does not have any organized B cell follicles.

Dr. Yan explained that this appears to be related to SKIV2L’s role in RNA degradation. In a separate finding published in the same issue of Science Immunology, researchers at Columbia University showed mutations in other components of the RNA exosome also cause B-cell deficiency. These mutations render RNA exosomes nonfunctional, causing cells to selectively retain RNA, particularly the non-coding form that doesn’t produce proteins. When B-cell progenitors become gunked up with excessive non-coding RNA, they can’t mature into functional B cells.

Taken together, the findings suggest that THES might be treated with a bone marrow transplant, replacing faulty B-cell progenitors that carry a genetic mutation with healthy ones. They also suggest that SKIV2L could offer a new target for fighting autoimmune diseases such as lupus, in which overactive B cells play a key role. By inhibiting the activity of this gene, Dr. Yan explained, it may be possible to control the number of B cells, lowering the intensity of autoimmune attack.

Dr. Yan is the Rita C. and William P. Clements, Jr. Scholar in Medical Research.

Other UTSW researchers who contributed to this study include Kun Yang (first author), Jie Han, Jennifer G. Gill, Jason Y. Park, Meghana N. Sathe, Jyothsna Gattineni, and Tracey Wright. M. Teresa de la Morena of the University of Washington also contributed.

This research was supported by grants from the National Institutes of Health (AI153576) and the Burroughs Wellcome Fund.

About UT Southwestern Medical Center

UT Southwestern, one of the nation’s premier academic medical centers, integrates pioneering biomedical research with exceptional clinical care and education. The institution’s faculty has received six Nobel Prizes, and includes 26 members of the National Academy of Sciences, 17 members of the National Academy of Medicine, and 14 Howard Hughes Medical Institute Investigators. The full-time faculty of more than 2,900 is responsible for groundbreaking medical advances and is committed to translating science-driven research quickly to new clinical treatments. UT Southwestern physicians provide care in more than 80 specialties to more than 100,000 hospitalized patients, more than 360,000 emergency room cases, and oversee nearly 4 million outpatient visits a year.