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Microsoft Word - FACLR_iPSC_05_2025_JSN.docx

https://labs.utsouthwestern.edu/sites/default/files/2025-05/FACLR_iPSC_lines_2025_0.pdf

1 updated May 2025 Sendai virus reprogrammed iPSC Lines * Clone used for CRISPR/Cas9 editing of GAA repeats Line Clone # Sex GAA repeat number in fibroblasts GAA repeat number in iPSCs Karyotype data Karyotype passage CTRL 3348 6 M Control size Control size Yes, normal p11 CTRL 7522 5 F Control size Control size Yes, normal p15 CTRL 7522 12 F Control size Control size Yes, normal p13 CTRL 6718 1 M Control size Control size Yes, normal p4 CTRL 6718 6 M

Loss of the adaptor protein ShcA in endothelial cells protects against monocyte macrophage adhesion, LDL-oxydation, and atherosclerotic lesion formation

https://labs.utsouthwestern.edu/sites/default/files/2022-07/41598_2018_Article_22819.pdf

1Scientific RePorTS | (2018) 8:4501 | DOI:10.1038/s41598-018-22819-3 www.nature.com/scientificreports Loss of the adaptor protein ShcA in endothelial cells protects against monocyte macrophage adhesion, LDL-oxydation, and atherosclerotic lesion formation Antoine Abou-Jaoude1, Lise Badiqué1, Mohamed Mlih1, Sara Awan1, Sunning Guo1, Alexandre Lemle1, Clauda Abboud1, Sophie Foppolo1, Lionel Host1, Jérôme Terrand1, Hélène Justiniano1, Joachim Herz2, Rachel L. Matz1 & Philippe Boucher   1

nihms653025.pdf

https://labs.utsouthwestern.edu/sites/default/files/2022-07/nihms653025.pdf

Differential splicing and glycosylation of Apoer2 alters synaptic plasticity and fear learning Catherine R. Wasser1,2,*,>†, Irene Masiulis2,†, Murat S. Durakoglugil1,2, Courtney Lane- Donovan1,2, Xunde Xian1,2, Uwe Beffert2, Anandita Agarwala2, Robert E. Hammer3, and Joachim Herz1,2,4,5,* 1Center for Translational Neurodegeneration Research, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA 2Department of Molecular Genetics, University of Texas Southwestern Medical

Structural Biology Core - Core Facilities - UT Southwestern

https://www.utsouthwestern.edu/research/core-facilities/structural-biology-core.html

The Structural Biology Core Facility provides a unique platform for biochemists and molecular biologists to engage in structural biology projects by making macromolecular crystallography available as a general tool.

ind-162493-amendment-2-advertisement-flyer-08-22-2023.pdf

https://labs.utsouthwestern.edu/sites/default/files/2023-09/ind-162493-amendment-2-advertisement-flyer-08-22-2023.pdf

\ PEGSITACIANINE FOR THE SURGICAL DETECTION OF HEAD AND NECK CANCER PURPOSE INCLUSION DESIGN To investigate whether Pegsitacianine a fluorescent nanoparticle can image head and neck cancer and unknown primary head and neck cancer during surgery or biopsy. 1. Adults ≥ 18 years of age 2. Patients with stage 1-4 Head and Neck Squamous Cell Carcinoma (HNSCC) undergoing surgical excision 1. Phase 2 Clinical trial of Pegsitacianine, which is

Postdoctoral Training Opportunities - Postdoctoral Scholars - UT Southwestern, Dallas, Texas

https://www.utsouthwestern.edu/research/postdoctoral-scholars/training/

Postdoctoral scholars can find available training opportunities posted by UT Southwestern faculty members.

Harold C. Simmons Comprehensive Cancer Center Bioinformatics Data Science Shared Resource

https://labs.utsouthwestern.edu/sites/default/files/2023-07/Data%20Science%20Fellowship%20Agreement.pdf

Harold C. Simmons Comprehensive Cancer Center Bioinformatics Data Science Shared Resource Data Science Fellowship Agreement SCCC-DSSR This agreement is between the parties named below and the Director of SCCC-DSSR, Professor Jeon Lee. By signing this document, awardees (and their mentors, if applicable) acknowledge and agree to abide by the fellowship conditions listed below. Fellowship Awardee (Full Name

Extract Repeat Unit - HTML

https://labs.utsouthwestern.edu/sites/default/files/2022-04/extract-repeat-unit.pdf

#!/usr/bin/perl   open  (FILE,  "Input.fastq")  ||  die  "can't:  $!";     open  (OUTPUT1,">Output.fastq")  ||  die  "can't:  $!";   while(<FILE>)   {   $line  =  $_;   chomp($line);                  if($line=~/^@DJDP.*/)                  {                  $seq=<FILE>;                  chomp($seq);                  $seq1=$seq

Extract Real Alignment - HTML

https://labs.utsouthwestern.edu/sites/default/files/2022-04/extract-real-alignment.pdf

#!/usr/bin/perl   open(FILE,  "accepted_hits_sorted.sam")  or  die("Unable  to  open  file");   open(OUTPUT,  ">final-­‐alignment.sam")  or  die("Unable  to  open  file");     use  strict;   my  $i;   my  $line;   my  $line1;   my  @group;   my  @sam_coord;   my  @sam_coord0;   my  @ID0;   my  @sam_coord1;   my  @ID1;   my  @record;   my  $j;   my  @as0;   my  @as;   my  $index;   my  $maxval;   my

Education Updates: Sponsored Programs - For Employees - UT Southwestern, Dallas, Texas

https://www.utsouthwestern.edu/research/spa/news/education.html

Remain up to date about educational opportunities covering a variety of research administration topics.