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RVTESTS |
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| Description |
Fast, handy association test software for family/unrelated studies and quantitaive/binary trait. Single variant test (score test, Wald test), burden tests (CMC, SKAT, VT) are implemented. It also facilitate meta-analysis. |
| Software Package | rvtests
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checkVCF |
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| Description |
Validation software for VCF file (used in lipid consortium) |
| Software Package | checkVCF |
SEQMINER |
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| Description |
Fast annotation software, and efficiently load and process VCF files. |
| Software Package | seqMiner |
QPLOT |
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| Description |
Quality check and visualize sequence alignment files |
| Software Package | QPLOT |
LASER |
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| Description |
Ancestry inference using off-target reads (suitable for target/exome sequencing) |
| Software Package | LASER |
Polymutt |
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| Description |
Family-based genotype caller |
| Software Package | Polymutt |
KARMA |
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| Description |
Illumina and ABI SOLiD sequence reads aligner |
| Software Package | karma |
ThunderVCF |
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| Description |
Low-coverage genotype calling using Hidden Markov-chain Model (HMM) |
| Software Package | Developing |