Featured Publications
Genome-wide role of codon usage on transcription and identification of potential regulators.
Zhao F, Zhou Z, Dang Y, Na H, Adam C, Lipzen A, Ng V, Grigoriev IV, Liu Y, Proc Natl Acad Sci U S A 2021 Feb 118 6
Synonymous but not Silent: The Codon Usage Code for Gene Expression and Protein Folding.
Liu Y, Yang Q, Zhao F, Annu Rev Biochem 2021 Jan
Effects of codon usage on gene expression are promoter context dependent.
Yang Q, Lyu X, Zhao F, Liu Y, Nucleic Acids Res 2021 01 49 2 818-831
A code within the genetic code: codon usage regulates co-translational protein folding.
Liu Y, Cell Commun Signal 2020 09 18 1 145
Adaptation of codon usage to tRNA I34 modification controls translation kinetics and proteome landscape.
Lyu X, Yang Q, Li L, Dang Y, Zhou Z, Chen S, Liu Y, PLoS Genet 2020 06 16 6 e1008836
FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora.
Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y, Nat Commun 2019 Sep 10 1 4352
eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons.
Yang Q, Yu CH, Zhao F, Dang Y, Wu C, Xie P, Sachs MS, Liu Y, Nucleic Acids Res. 2019 Aug
Codon usage regulates human KRAS expression at both transcriptional and translational levels.
Fu J, Dang Y, Counter C, Liu Y, J. Biol. Chem. 2018 11 293 46 17929-17940
Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.
Zhou Z, Dang Y, Zhou M, Yuan H, Liu Y Elife 2018 Mar 7
DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition.
Liu X, Dang Y, Matsu-Ura T, He Y, He Q, Hong CI, Liu Y Mol. Cell 2017 Jun