Resources

Resources

Databases

Web-Based Tools

Workflows

For assistance with any of the following analytics tools please contact the BICF Help Desk.

Databases

 


OMERO Image Bank

OMERO Image Bank

(UTSW internal use only)

The BioHPC ImageBank uses OMERO, from the Open Microscopy Environment, to provide a portal for storage, visualization, and management of microscopy images. OMERO is part of the OME © 2000-2015 University of Dundee & Open Microscopy Environment.

 


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Web-Based Tools


UCSC Genome Browser

UCSC Genome Browser

(UTSW internal use only)

BioHPC team provides a mirror of UCSC Genome Browser.


 

cBioPortal

(UTSW internal use only)

UT Southwestern provides an internal cBioPortal. BICF can help load your study data into the database.


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Workflows


Astrocyte Workflows

Astrocyte Workflows

(UTSW internal use only)

The BICF provides and maintains Analysis workflow packages for: ChIP-Seq, RNA-Seq, Somatic Mutation Calling and Germline Variant Analysis.

UT Southwestern Data Analysis Workflow System (U-DAWS)

Publically available BICF provided Analysis workflows available on Astrocyte


 

Auto Docker

Automatic Docker image builder and maintainer


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