Computational and Systems Biology Journal Club

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Podcast

12 noon, NB11.120

2009/2010 Academic Year

Date	Presenter (Lab)	Journal
9/21/2009 Computational and Systems Biology Discussion Group	Hong Qian, University of Washington	Cellular Signaling Dynamics and Computational Biochemical Systems
9/28/2009	No Journal Club
10/5/2009 Computational and Systems Biology Discussion Group	Paul Wiggins, Whitehead Institute	*Connecting the dots: Strong intra-nucleoid interactioins organize the E. coli* chromosome**
10/12/2009	Columbus Day	No journal club
10/19/2009	Cancelled
10/26/2009	Christian Fankhauser, Switzerland	TBD
11/02/2009	cancelled
11/09/2009	Juan Mendoza (Thomas)	TBDDesign of a Novel Globular Protein Fold with Atomic-Level Accuracy Kuhlman et al Science 2003 http://www.sciencemag.org/cgi/content/full/302/5649/1364
11/16/2009	Johan Hattne (Otwinowski)	Berkholz et al. (2009) "Conformation Dependence of Backbone Geometry in Proteins" Structure 17, 1316-1325 DOI: 10.1016/j.str.2009.08.012 Link: http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VSR-4XFG01X-8&_user=38572&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000059712&_version=1&_urlVersion=0&_userid=38572&md5=bda2db21793ced2d30ee192cef102d67
12/7/2009	cancelled
12/14/2009-01/10/2010	Winter break	No journal club
01/11/20100	Sasha Safronova (Grishin)	Melissa J. Fullwood et al. (2009) An oestrogen-receptor-a-bound human chromatin interactome, Nature 462, 58-64 (5 November 2009) \| doi:10.1038/nature08497; Received 25 July 2009; Accepted 11 September 2009 http://www.nature.com/nature/journal/v462/n7269/full/nature08497.html
01/18/2010	Martin Luther King Day
01/25/2010	Jing Tong (Grishin)	Amrita Basu and et al. (2009) Proteome-wide prediction of acethlation substrates http://www.pnas.org/content/106/33/13785.full.pdf
02/01/2010 2pm	Shuoyong Shi (Grishin)	Mallika Veeramalai, Yuzhen Ye and Adam Godzik. TOPS FATCAT: fast flexible structural alignment using constraints derived from TOPS Strings Model. BMC Bioinformatics 2008,9:358 http://www.biomedcentral.com/1471-2105/9/358
02/08/2010 2pm Computational and Systems Biology Discussion Group 2pm	Jennifer Linderman University of Michigan	Multi-scale modeling to understand tuberculosis
02/15/2010	Presidents Day	No journal club
02/22/2010	Stephen Helms (Ranganathan)
03/01/2010	Pelin Armutlu (Rice)
03/06/2010-03/14/2010	Spring break	No journal club
03/15/2010	Bong-Hyun Kim (Grishin)
03/22/2010	Thomas Person (Forst)
03/29/2010
04/05/2010
04/12/2010
04/19/2010	Jimin Pei (Grishin)
04/26/2010
05/03/2010
05/10/2010