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Date
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Presenter
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Journal
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9/8/2008
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Bong-Hyun Kim
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L. Breiman 2001 machine learning
http://www.springerlink.com/content/u0p06167n6173512 RF in microarray
http://www.biomedcentral.com/1471-2105/9/319
http://www.biomedcentral.com/1471-2105/7/3
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9/15/2008
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Jacob Schwartz
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"Distinct role of long 3' UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons." Cell 2008 Jul 11; 134(1):175-87.
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9/22/2008
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Cristi Galindo
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Work in Progress "Microsatellites: Potential Facilitators of Evolutionary Change and Cancer"
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9/29/2008
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Jimin Pei
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An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms by Tomoshige Hiratsuka, Kazuo Furihata, Jun Ishikawa, Haruyuki Yamashita,Nobuya Itoh, Haruo Seto, and Tohru Dairi; Science 19 September 2008: 1670-1673.
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10/6/2008
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Discussion Group-
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Dana Pe'er, Ph.D., Assistant Professor, Columbia University "Genetic Regulatory Complexity, Lessons from Yeast and Cancer"
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10/13/2008
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No Journal Club
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10/20/2008
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Dominika Borek
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"High-resolution structure prediction and the crystallographic phase problem." Nature (8 November 2007) doi:10.1038/nature06249 450:259-264
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10/27/2008
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Yong Wang
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Work in progress "ProCAIn: protein Profile-profile Comparison with Assisting Information -- a new protein sequence similarity search method."
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11/3/2008
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Lisa Kinch
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"Emergence of symetry in homooligomeric biological assemblies."PMID:18849473http://www.pnas.org/content/105/42/16148.abstract
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11/10/2008
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Discussion Group
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Jim Feader, Ph.D., -CANCELLED
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11/17/2008
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Shuoyong Shi
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Alternative splicing and protein structure evolutionJournal: Nucleic Acids Research, 2008, Vol. 36, No. 2 550-558link: http://nar.oxfordjournals.org/cgi/content/abstract/36/2/550
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12/1/2008
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Juan Mendoza
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"Improved residue contact prediction using support vector machines and a large feature set." BMC Bioinformatics, 2007,8:113, http://www.biomedcentral.com/1471-2105/8/113
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12/8/2008
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Discussion Group
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Jim Feader, Ph.D., Associate Professor, Biological Sciences, University of Pittsburgh "Rule-based modeling of biological signal transduction"
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1/12/2009
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Chalam Chitturi
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Work in progress
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1/26/2009
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Sasha Safronova
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"Markov Additive Processes and Repeats in Sequences." J. Appl. Prob.44, 514-527 (2007)
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2/2/2009
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Discussion Group
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Matthew A. Lewis, Ph.D., Assistant Professor, Radiology, UT Southwestern Medical Center "An Introduction to Compressive Sensing and Other State-of-the-Art Data Analyses"
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2/9/2009
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No Journal Club
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No Journal Club
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2/23/2009
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Ruslan Sadreyev
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Visel et al. Ultraconservation identifies a small subset of extremely constrained developmental enhancershttp://www.nature.com/ng/journal/v40/n2/abs/ng.2007.55.html
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3/2/2009
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Discussion Group
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Ned Wingreen, Ph.D., Professor Princeton University
"Modeling adaptation in E. coli chemotaxis: precise, robust and optimized"
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3/9/2009
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Spring Break
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No Journal Club
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3/16/2009
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Nishanth Marthandan
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"Global variation in copy number in the human genome", Nature 444, 444-454 (23 November 2006) | doi:10.1038/nature05329; Received 13 June 2006; Accepted 10 October 2006 http://www.nature.com/nature/journal/v444/n7118/full/nature05329.html
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3/23/2009
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Yuxiao Wang
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unpublished data
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3/30/2009
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Betsy Goldsmith
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"NLP Search of MEDLINE Based on Cognition CSIR"
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4/6/2009
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No Journal Club
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4/13/2009
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Jing Tong
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"Detection of protein catalytic residues at high precision using local network properties" (http://www.biomedcentral.com/1471-2105/9/517) .
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4/20/2009
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Juan Mendoza
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Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function by Serohijos, A. W., et al. (2008) Proc Natl Acad Sci U S A. 105, 3256-61. http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=2265173&blobtype=pdf
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4/27/2009
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Yang Xie
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"Statistical methods for integrating multiple types of genomic data" |
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5/4/2009
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Nassim Sohaee
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Work in progress "Clustering Algorithms for Protein Interaction Networks"
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