|
Date
|
Presenter (Lab)
|
Journal
|
| 10/4/2010 |
organizational meeting |
|
| 10/11/2010 |
Mark Kittisopikul |
Noisy biological network architecture |
| 10/18/2010 |
CSB Discussion Group: Joanna Masel, Ph.D. |
Molecular Errors and Evolvability |
| 10/25/2010 |
Kartik Rajagopalan |
Kwon YK et al. (2008). A domino effect in antifolate drug action in Escherichia
coli. NAT CHEM BIO 4(10):602-608. |
| 11/1/2010 |
Rhui Zhong |
Wang K, et al. (2009). Genome-wide identification of post-translational modulators of transcription factor activity in human B cells. Nature Biotech (27)9:829-839. doi:10.1038/nbt.1563 |
| 11/8/2010 |
Felipe-Andres Piedr |
Ho BK, Agard DA, "Conserved tertiary couplings stabilize elements in the PDZ fold, leading to characteristic patterns of domain conformational flexibility," Protein Sci. 2010 Jan 5. |
| 11/15/2010 |
Syed Zaheer |
Toettcher JE, et al. (2010) A synthetic–natural hybrid oscillator in human cells. PNAS 107(39): 17047-17052 |
| 11/22/2010 |
No JC (Thanksgiving week) |
|
| 11/29/2010 |
Munehiro Asari |
Tero, A., Takagi, S., Saigusa, T., Ito, K., Bebber, D. P., Fricker, M. D., Yumiki, K., Kobayashi, R. & Nakagaki, T. (2010) Rules for biologically inspired adaptive network design. Science 327, 439-42. |
| 12/6/2010 |
Bhadrachalam Chitturi |
Compact Structural Motifs in Proteins |
| 12/13/2010 |
Hua Cheng |
Zhang Y. et al 2009. Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science. 325(5947):1544-9. DOI: 10.1126/science.1174671 |
12/20/2010-
1/7/2011 |
No JC (Winter Break) |
|
| 1/10/2011 |
Darui Xu |
Sankararaman et al. (2010) Active site prediction using evolutionary and structural information. Bioinformatics, 26, 617-24 Sankararaman et al. (2008) INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification. Bioinformatics, 24, 2445-52. |
| 1/17/2011 |
No JC (MLK Day) |
|
| 1/24/2011 |
No JC |
|
| 1/31/2011 |
No JC |
|
| 2/7/2011 |
Qian Cong (WIP) |
Development of sequence analysis pipeline and application to Candidatus Liberibacter asiaticus proteome |
| 214/2011 |
Jing Tong |
Predicting protein–protein interactions based only on sequences information” Juwen Shen etc. PNAS. 2007 |
| 2/21/2011 |
Jeremy Semeiks |
Passos et al, "Feedback between p21 and reactive oxygen production is necessary for cell senescence", Mol Sys Biol 6 (2010). |
| 2/28/2011 |
No JC |
|
| 3/7/2011 |
No JC (Spring Break) |
|
| 3/14/2011 |
Hui Xu |
[1] Ofran Y, Rost B. ISIS: interaction sites identified from sequence. Bioinformatics. 2007 23:13–6.
[2] Ofran Y, Rost B. Protein–protein interaction hotspots carved into sequences. PLoS Comput Biol. 2007 3(7): e119. |
| 3/21/2011 |
No JC |
|
| 3/28/2011 |
Sasha Safronova |
Blum MG, Jakobsson M. (2011) Deep divergences of human gene trees and models of human origins. Mol Biol Evol 28(2):889-98 |
| 4/4/2011 |
|
|
| 4/11/2011 |
|
|
| 4/18/2011 |
CSB Discussion Group: Dr. Califano |
|
| 4/25/2011 |
Raquel Bromberg |
|
| 5/2/2011 |
|
|
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