Software

Software

dCLIP

A command line software for discovering differential binding regions in CLIP-Seq (HITS-CLIP, PAR-CLIP or iCLIP) experiments.

dCLIP version 2.0

DisHet

An R package for estimating the gene expression levels and component proportions of the normal, stroma (immune) and tumor components of bulk tumors.

The DisHet package also documents a series of gene signatures for tumor infiltrating immune cells, which are defined with empirical evidence gained from DisHet analysis of 35 RCC trio RNA-Seq data.

DisHet version 0.2.0