Resources

Software

Some of the best genome viewers to visualize your data:

BAM/SAM format explained. These are the alignment files that you get from the Lab:

  • SAM/BAM wiki (link)
  • SAM Format official specifications (link)

Workshops:

  • Broad Workshops - These are great to understand whole exome/genome sequencing.
    • GATK3 workshop (link)

Downloadable Genomes:

  • igenomes bundle (UCSC based) (link)
  • Broad GATK bundle (NCBI based) (link)