Research

Four Major Areas of Focus

Important mutations do not always declare themselves without challenge. This is particularly true of mutations that affect immune function. Without an infection, immunocompromised mice may seem entirely normal. For example, the C3H/HeJ mouse is indistinguishable from other C3H substrains unless it is challenged with LPS or an authentic Gram-negative infection (1).  It may be that many of our genes are conditionally important in the same way. In the Beutler lab, genetic screens are presently being applied to study four important topics in immunobiology.

Figure 3

Figure 1.  Two 3D docking studies forTLR2 and MyD88.
(A) “Face-to-face” interaction proposed for TLR2 receptor-adapter interface. TLR2 is shown in cyan, and MyD88 is shown in tan. Critical P residues of BB loops are shown in red, and critical regions of Poc sites in green.
(B) “Back-to-Back” interaction mode mediating TIR domain oligomerization. In this model structures represent either two TIR domains or two MyD88 domains interacting after ligand activation. α-helices mediate the antiparallel interaction. Mutation of the BB loop (P200 in MyD88, P681 in TLR2) or the pococurante site (I179 in MyD88, V660 in TLR2) abrogates responses from all TLRs except TLR2/6.

Signaling pathways utilized by the TLRs and other innate immune sensors are kept under surveillance in screens designed to detect mutations that impair the detection of microbes.

In the TLR signaling screen, signaling from seven TLRs is monitored by measuring tumor necrosis factor (TNF)-α production by peritoneal macrophages from ENU-mutagenized mice ex vivo. This screen has led to the decipherment of pathways for microbe sensing, identifying proteins that could not be "guessed" to participate in signaling (2-4). In addition, the study of several mutants identified in the screen has revealed subtleties in the nature of signaling from several TLRs (3;5;6). For example, the pococurante mutation of MyD88 demonstrated that signaling from TLR2 is inherently different from signaling through the other TLRs, requiring only one of two known sites of receptor-adapter interaction(Figure 3) (5). The Double-stranded DNA Macrophage Screen, to identify components involved in sensing cytoplasmic double-stranded DNA (dsDNA), and the NLRP3 Inflammasome Screen, to identify components involved in sensing “danger signals,” are also being carried out on macrophages ex vivo. An in vivo screen for response to injected CpG oligodeoxynucleotides has recently been initiated.

Infecting mice with authentic pathogens using small inocula that are normally eliminated or contained by mice, can detect mutations that impair host defense.

Screens for susceptibility to mouse cytomegalovirus infection (MCMV Susceptibility and Resistance Screen), and for clearance of lymphocytic choriomeningitis virus (LCMV Clearance Screen) in vivo are currently underway. These screens rely on the highly reproducible behavior of mice challenged by infection, which assures that phenovariants may be easily discerned.  Some of the identified mutations have also come as great surprises (7). For example, mayday mice die between 24 and 72 hours after infection with 5 x 104 PFU of MCMV, and were found to carry a mutation in the gene encoding an inwardly-rectifying potassium (K+) channel subunit, Kir6.1 (8). Screens for control of MCMV, adenovirus, influenza, and Rift Valley Fever Virus are performed in macrophages ex vivo (Ex Vivo Macrophage Screen for Control of Viral Infection

Figure 2. Study of DSS-induced colitis. Screening of G3 mice for susceptibility to DSS-induced colitis. 1% DSS was administered in the drinking water and body weight was determined daily. C57BL/6 mice receiving 1% DSS (black, n=20) or 0% DSS (gray, n=10) served as controls. Putative mutants are color coded.

ENU mutations can also render mice highly resistant to infection by specific pathogens, or result in autoimmune and inflammatory disease.

The DSS-induced Colitis Screen is designed to discover mutations that result in susceptibility to chemically-induced colitis, which is thought to arise from excessive and sustained inflammatory host immune responses against commensal intestinal microbes. The screen monitors weight loss as an indication of colitis (Figure 2) allowing sensitizing mutations to be easily retrieved. Looking for changes in DSS sensitivity may also reveal mutations that inappropriately activate immune responses to normal intestinal flora. Because of their potential to activate both innate and adaptive immune systems, mutations identified in each of these screens may also reveal molecules that contribute to autoimmune disease. (Figure 3)

Figure 3. Using genetics to understand the molecular mechanisms of intestinal bowel disease (IBD). Colitis can be induced by the chemical dextran sodium sulfate (DSS), which is toxic to intestinal epithelial cells (IECs) and compromises the mucosal barrier that usually protects the body from intestinal microflora. By screening ENU-induced mouse mutations (red text) with the DSS-induced Colitis Screen, we have identified a number of molecules and pathways that are important in protecting against IBD. These include TLR signaling, epithelial growth factor receptor (EGFR) signaling, aquaporin 3 (Aqp3), the response to unfolded proteins causing endoplasmic reticulum (ER) stress, and numerous factors involved in vesicle transport and secretion, which are required to release cytotoxic molecules necessary to kill invasive pathogens. Mutations recorded in the Mutagenetix database are colored red.

The nature of the innate:adaptive immune connection is being probed.

Although the innate immune response clearly contributes to the development of an adaptive immune response, the mechanism by which this occurs remains unclear. Together with our colleagues in the Nemazee lab at The Scripps Research Institute, we have shown that TLR signaling is not required for both effective antibody production following immunization with any classical adjuvant, including Freund’s adjuvant (9), or for strong cytotoxic T-lymphocyte (CTL) responses (10).   Using a viral vector (recombinant Semliki Forest Virus; rSFV) to produce a model antigen, we have probed T-dependent B cell responses. In addition, we have used NP-Ficoll to probe T-independent B cell responses and flow cytometry to look for defects of immune cell development. We have found a total of 19 mutations that impair the antibody response. Interestingly, all of them affect cells of the adaptive immune system rather than the innate immune system (11).  

  

References

1. Poltorak, A., He, X., Smirnova, I., Liu, M. -., Van Huffel, C., Du, X., Birdwell, D., Alejos, E., Silva, M., Galanos, C., Freudenberg, M. A., Ricciardi-Castagnoli, P., Layton, B., and Beutler, B. (1998) Defective LPS Signaling in C3H/HeJ and C57BL/10ScCr Mice: Mutations in Tlr4 gene. Science. 282, 2085-2088.

2. Hoebe, K., Du, X., Georgel, P., Janssen, E., Tabeta, K., Kim, S. O., Goode, J., Lin, P., Mann, N., Mudd, S., Crozat, K., Sovath, S., Han, J., and Beutler, B. (2003) Identification of Lps2 as a Key Transducer of MyD88-Independent TIR Signaling. Nature. 424, 743-748.

3. Hoebe, K., Georgel, P., Rutschmann, S., Du, X., Mudd, S., Crozat, K., Sovath, S., Shamel, L., Hartung, T., Zahringer, U., and Beutler, B. (2005) CD36 is a Sensor of Diacylglycerides. Nature. 433, 523-527.

4. Tabeta, K., Hoebe, K., Janssen, E. M., Du, X., Georgel, P., Crozat, K., Mudd, S., Mann, N., Sovath, S., Goode, J., Shamel, L., Herskovits, A. A., Portnoy, D. A., Cooke, M., Tarantino, L. M., Wiltshire, T., Steinberg, B. E., Grinstein, S., and Beutler, B. (2006) The Unc93b1 Mutation 3d Disrupts Exogenous Antigen Presentation and Signaling Via Toll-Like Receptors 3, 7 and 9. Nat Immunol. 7, 156-164.

5. Jiang, Z., Georgel, P., Li, C., Choe, J., Crozat, K., Rutschmann, S., Du, X., Bigby, T., Mudd, S., Sovath, S., Wilson, I. A., Olson, A., and Beutler, B. (2006) Details of Toll-Like Receptor:Adapter Interaction Revealed by Germ-Line Mutagenesis. Proc Natl Acad Sci U S A. 103, 10961-10966.

6. Jiang, Z., Georgel, P., Du, X., Shamel, L., Sovath, S., Mudd, S., Huber, M., Kalis, C., Keck, S., Galanos, C., Freudenberg, M., and Beutler, B. (2005) CD14 is Required for MyD88-Independent LPS Signaling. Nat Immunol. 6, 565-570.

7. Crozat, K., Georgel, P., Rutschmann, S., Mann, N., Du, X., Hoebe, K., and Beutler, B. (2006) Analysis of the MCMV Resistome by ENU Mutagenesis. Mamm Genome. 17, 398-406.

8. Croker, B. A., Lawson, B. R., Berger, M., Eidenschenk, C., Blasius, A. L., Moresco, E. M., Sovath, S., Cengia, L., Shultz, L. D., Theofilopoulos, A. N., Pettersson, S., and Beutler, B. A. (2008) Inflammation and Autoimmunity Caused by a SHP1 Mutation Depend on IL-1, MyD88, and a Microbial Trigger. Proc Natl Acad Sci ,USA. 105, 15028-15033.

9. Gavin, A. L., Hoebe, K., Duong, B., Ota, T., Martin, C., Beutler, B., and Nemazee, D. (2006) Adjuvant-Enhanced Antibody Responses in the Absence of Toll-Like Receptor Signaling. Science. 314, 1936-1938.

10. Janssen, E., Tabeta, K., Barnes, M. J., Rutschmann, S., McBride, S., Bahjat, K. S., Schoenberger, S. P., Theofilopoulos, A. N., Beutler, B., and Hoebe, K. (2006) Efficient T Cell Activation Via a Toll-Interleukin 1 Receptor-Independent Pathway. Immunity. 24, 787-799.

11. Arnold, C. N., Pirie, E., Dosenovic, P., McInerney, G. M., Xia, Y., Wang, N., Li, X., Siggs, O. M., Karlsson Hedestam, G. B., and Beutler, B. (2012) A Forward Genetic Screen Reveals Roles for Nfkbid, Zeb1, and Ruvbl2 in Humoral Immunity. Proc Natl Acad Sci U S A. 109, 12286-12293.