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Biochemistry Training Track

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Mission

The Biochemistry Training Track within the Biological Chemistry Graduate Program is designed to train students in the theory and techniques related to the molecular mechanisms that control cellular activities.  Topics encompassed within the program include gene regulation, RNA-mediated processes, protein interactions, enzyme functions, and cellular metabolism. 

Program Faculty - click here to view Biochemistry faculty and research interests

Training is provided through a variety of experiences as listed below:

Serine acetylation of MKK by YopJ regulates activity

Biological Chemistry Degree Plan

Required Courses:

3 Units:  Physical Biochemistry I and II, required of all students
3 Units:  Chosen from among any class registered under Biological Chemistry
3 Units:  Any class offered by the DBS

Works-In-Progress (WIP):

Each student presents a seminar on his/her own research annually, and is required to attend this seminar series on a weekly basis.  

Journal Clubs:

All students are required to participate in a weekly faculty-mentored Journal Club that cover a broad range of topics in Biochemistry and related fields. 

Dissertation Committees:

 Students are expected to meet on a regular basis with their dissertation committee to discuss their progression toward degree.

Qualifying Exam:

Students are expected to pass their Qualifying Exam by May of their first year in the Program (second year in DBS).

For more information contact the Biological Chemistry Program Chair Kristen Lynch, or other program faculty.

 


 Program Faculty

Chair:  Russell DeBose-Boyd 

Stefan Andersson -- Steroid hormone action and metabolism; biochemistry, pharmacology, and genetics of 17b-hydroxysteroid dehydrogenases.

Richard Auchus -- Biochemical, structural, and genetic studies of the enzymes and pathways of steroid hormone biosynthesis in human beings.

Michael Brown -- Regulation of gene expression; cell-surface receptor function; genetics and biochemistry of lipoprotein and cholesterol metabolism.

Richard Bruick -- Regulation of the mammalian hypoxic response pathway.

Igor Butovich -- Lipidomics; ocular (bio)chemistry; molecular enzymology; lipoxygenases, lipid peroxidation, and arachidonic acid cascade.

Chuo Chen -- Naturalproduct synthesis, synthetic methodology development, small molecule library synthesis and chemical biology.

David Chuang  -- Structure and function of macromolecular machines; mechanism of chaperone-mediated protein folding.

Nicholas Conrad -- gene expression and RNA biogenesis in Kaposi's sarcoma-associated herpesvirus.

David Corey -- Engineering proteins and nucleic acids for novel function.

Russell DeBose-Boyd  -- Regulation of HMG-CoA reductase and sterol metabolism.

Jef De Brabander -- Synthesis of natural products and other molecular architectures and interrogation of their mode-of-action using molecular pharmacology and biochemistry.

George DeMartino -- Biochemical mechanisms and regulation of intracellular protein degradation; structure and function of intracellular proteases.

Victoria Esser  -- Molecular biology of carnitine palmitoyltransferase; tissue-specific knockout mouse of muscle CPT I.

Kevin H. Gardner -- Biophysical and biochemical studies of photosensors and other environmental sensors.

Marie-Alda Gilles-Gonzalez -- Mechanisms of O2, CO and NO sensing and in novel signal-transduction heme proteins.

Elizabeth Goldsmith -- Crystallographic studies of recognition and signal transduction in protein molecules.

Joseph Goldstein -- Genetics and biochemistry of lipoprotein and cholesterol metabolism; cell-surface receptor function; regulation of gene expression.

Bethany Janowski -- Gene regulation by small RNAs

Jennifer Kohler -- understanding and exploiting the molecular foundations of glycoconjugate biosynthesis

Mark Lehrman -- Informational carbohydrates in the endoplasmic reticulum:  roles in protein folding, stress responses and human disease.

Wen-Hong Li -- Intercellular communications through gap junctions; molecular engineering of fluorescent sensors for cellular imaging; wide field, confocal and multi-photon fluorescence microscopy; mechanisms and functions of cellular calcium signaling.

Qinghua Liu -- Cellular use of small RNAs to specifically silence gene expression; harnessing the power of RNAi to shut down expression of pathological genes to cure human disease.

John MacMillan -- Isolation and structural determination of biologically active natural products from marine bacteria; new methodology for stereochemical assignment; medicinal chemistry.

Steven McKnight -- Molecular genetics and biochemical studies of mammalian gene regulation.

Carole Mendelson  -- Molecular mechanisms in tissue-specific, developmental and hormonal regulation of eukaryotic gene expression.

Marc Mumby -- Signaling pathways controlling cell growth and transformation.

Kim Orth -- Signal transduction in the microbial pathogen Yersinia pestis.

Steven Patrie -- 

Margaret Phillips -- Polyamine and pyrimidine metabolism in trypanosome and malaria parasites.

Rama Ranganathan -- Biophysical mechanisms that underlie cellular signal transduction in sensory neurons.

Joseph Ready -- Discovery and application of new chemical reactions; total synthesis of complex molecules.

Michael Rosen -- Analysis of structural, biochemical, and cell biological mechanisms that regulate the actin cytoskeleton.

Vanessa Sperandio -- Quorum sensing in enteropathogenic Escherichia coli

Uttam Tambar - Synthesis of complex biologically active natural products, and development of new tandem methodologies.

Diana Tomchick -- Structural characterization of signal-transduction protein complexes, proteins involved in reproductive biology and novel proteins from pathogenic bacteria; improved methods of crystallographic data collection, processing and phasing; automated crystallization techniques.

Benjamin Tu -- metabolic oscillation and the mechanisms by which cellular processes are coupled to cyclic changes in metabolic or redox state in time

Kosaku Uyeda -- Elucidation of biochemical mechanisms for regulation of carbohydrate metabolism in mammalian cells.

Xiaodong Wang -- Biochemistry of mammalian apoptosis, chemical synthesis of inhibitors of apoptosis.

Noelle Williams -- Development of novel chemical leads from high throughput screens, new natural products, or rational target-based chemical design as viable therapeutics for preclinical models; areas explored include pharmacokinetics, formulation, metabolism, toxicology, and efficacy for a variety of disease models, including cancer, bacterial infections, and neurological disorders

Wade Winkler -- RNA biology; biochemistry of gene regulation; RNA structure and function; posttranscriptional genetic control; microbial metabolism.

Jin Ye -- Geranylgeranylation and HCV replication; regulation of geranylgeranyl lipid homeostasis; regulated intramembrane proteolysis.