Richard Scheuermann, PhD

Professor
Endowed Title: John H. Childers, M.D., Professorship in Pathology
Pathology, Department of Clinical Sciences, Cancer Immunobiology Center
Graduate Program: Cancer Biology
Immunology

Contact Information

UT Southwestern Medical Center
5323 Harry Hines Boulevard
Dallas, Texas 75390

Office Phone: 214-648-4115
Office Fax: 214-648-4070

richard.scheuermann@utsouthwestern.edu

Biography

PROFESSIONAL EXPERIENCE

1980-1981 Massachusetts Institute of Technology, Department of Biology. Undergraduate student. Research: Regulation of E.coli alkaline phosphatase synthesis using an in vitro transcription-translation system.

 

1981-1986 University of California, Berkeley, Department of Molecular Biology. Graduate student. Research: Identification and purification of the e-subunit of E. coli DNA polymerase III: an editing exonuclease for DNA replication.

 

1986-1991 Basel Institute for Immunology, Basel, Switzerland. Research Member Research: Analysis of mouse immunoglobulin heavy chain enhancer regulation. Molecular aspects of hematopoiesis and tumorigenesis using c-myc transgenic mice.

 

1992-Present UT Southwestern Medical Center, Department of Pathology.

Assistant Professor (1992-1998); Associate Professor with tenure (1998-2004); Professor (2004-present).

Research: Signal transduction, cell cycle control and apoptosis in the regulation of tumor cell growth and dormancy in vivo and in vitro. The role of repression and nuclear matrix attachment in immunoglobulin heavy chain enhancer and TNF-alpha regulation and lymphoid development. Quantitative PCR as a diagnostic tool to evaluate human herpesvirus activation in immuno-compromised patients and to measure minimal residual disease in cancer patients. Signal transduction in the control of antigen processing and presentation in B lymphocytes. Bioinformatics and computational biology applied to problems in microbiology and immunology.

 

Jan. 2002 - Aug. 2002 University of California, San Diego, San Diego Supercomputer Center, Visiting Scholar (sabbatical). Research: Develop of a relational database to integrate results obtained from multiple experimental approaches, and to develop data analysis algorithms to provide a comprehensive understanding of the complexities of signal transduction at a whole-cell level.

 

Education

Graduate SchoolUniversity of California-Berkeley (1986)

Research Interests

Bioinformatic database development for infectious disease, biodefense and immunology research
Development of new computational tools for large scale data analysis
Signal transduction in the control of lymphocyte growth, development and function

Publications

Featured
Ontologies for clinical and translational research: Introduction.

Smith B, Scheuermann RH, Journal of biomedical informatics, 2011 Feb; 44 (1):3-7

Featured
Toward an ontology-based framework for clinical research databases.

Kong YM, Dahlke C, Xiang Q, Qian Y, Karp D, Scheuermann RH, Journal of biomedical informatics, 2011 Feb; 44 (1):48-58

Featured
Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Karp DR, Marthandan N, Marsh SG, Ahn C, Arnett FC, Deluca DS, Diehl AD, Dunivin R, Eilbeck K, Feolo M, Guidry PA, Helmberg W, Lewis S, Mayes MD, Mungall C, Natale DA, Peters B, Petersdorf E, Reveille JD, Smith B, Thomson G, Waller MJ, Scheuermann RH, Human molecular genetics, 2010 Feb; 19 (4):707-19

Featured
GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach.

Zhang S, Cao J, Kong YM, Scheuermann RH, Bioinformatics (Oxford, England), 2010 Apr; 26 (7):905-11

Featured
Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data.

Qian Y, Wei C, Eun-Hyung Lee F, Campbell J, Halliley J, Lee JA, Cai J, Kong YM, Sadat E, Thomson E, Dunn P, Seegmiller AC, Karandikar NJ, Tipton CM, Mosmann T, Sanz I, Scheuermann RH, Cytometry. Part B, Clinical cytometry, 2010 ; 78 Suppl 1:S69-82

Featured
Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks.

Chang RL, Luo F, Johnson S, Scheuermann RH, International journal of bioinformatics research and applications, 2010 ; 6 (2):101-19

Featured
Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population.

Greenbaum JA, Kotturi MF, Kim Y, Oseroff C, Vaughan K, Salimi N, Vita R, Ponomarenko J, Scheuermann RH, Sette A, Peters B, Proceedings of the National Academy of Sciences of the United States of America, 2009 Dec; 106 (48):20365-70

Featured
Toward an ontological treatment of disease and diagnosis.

Scheuermann RH, Ceusters W, Smith B, Summit on translational bioinformatics, 2009 ; 2009:116-20

Featured
An improved ontological representation of dendritic cells as a paradigm for all cell types.

Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG, BMC bioinformatics, 2009 ; 10:70

Featured
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S, Nature biotechnology, 2007 Nov; 25 (11):1251-5

Honors/Awards

James A. Shannon Director’s Award

(1984)

Professional Associations/Affiliations

Gene Ontology Consortium

Scientific Advisory Board (2009)

Lead Horse Technologies

Science & Medicine Advisory Board (2009)

American Association for Cancer Research

American Association of Immunologists

Association for Molecular Pathology