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David Trudgian, PhD
Contact Information
UT Southwestern Medical Center
5323 Harry Hines Boulevard
Dallas, Texas 75390
Office Phone: 214-648-3338
Office Fax: 214-648-8856
Biography
I joined UT Southwestern in September 2011 as Instructor in Biochemistry. In this position I am responsible for bioinformatics support within the Proteomics Core and Mirzaei Lab, and carry out research and software development in proteomics data analysis.
I initially studied computer science at the University of Exeter, Devon, UK, gaining my BSc in 2004. After completing my undergraduate studies I pursued a PhD in computer science, also at the University of Exeter. The focus of my PhD studies was the development of novel neural-network algorithms for classification problems involving peptides and proteins, and I gained my doctorate in 2008. Following a short spell as a teaching fellow at Exeter I joined the University of Oxford in 2008 as a bioinformatician in proteomics. Between 2008 and 2011 I provided bioinformatics support for the proteomics core facilities, and carried out research in proteomics data analysis. From 2009 to 2011 I was additionally a member of the Ratcliffe/Pugh oxygen sensing laboratory, heavily involved in the study of oxygen sensing via oxidative post-translational modifications on proteins.
Research Interests
Publications
Fischer R, Trudgian DC, Wright C, Thomas G, Bradbury LA, Brown MA, Bowness P, Kessler BM, Molecular & cellular proteomics : MCP, 2011 Oct;
Singleton RS, Trudgian DC, Fischer R, Kessler BM, Ratcliffe PJ, Cockman ME, The Journal of biological chemistry, 2011 Sep; 286 (39)
Trudgian DC, Ridlova G, Fischer R, Mackeen MM, Ternette N, Acuto O, Kessler BM, Thomas B, Proteomics, 2011 Jul; 11 (14)
Trudgian DC, Thomas B, McGowan SJ, Kessler BM, Salek M, Acuto O, Bioinformatics (Oxford, England), 2010 Apr; 26 (8)
Masson N, Singleton RS, Sekirnik R, Trudgian DC, Ambrose LJ, Miranda MX, Tian YM, Kessler BM, Schofield CJ, Ratcliffe PJ, EMBO reports, 2012 Feb;
Wright C, Sibani S, Trudgian D, Fischer R, Kessler B, Labaer J, Bowness P, Molecular & cellular proteomics : MCP, 2012 Feb; 11 (2):M9.00384
Bardella C, El-Bahrawy M, Frizzell N, Adam J, Ternette N, Hatipoglu E, Howarth K, O'Flaherty L, Roberts I, Turner G, Taylor J, Giaslakiotis K, Macaulay VM, Harris AL, Chandra A, Lehtonen HJ, Launonen V, Aaltonen LA, Pugh CW, Mihai R, Trudgian D, Kessler B, Baynes JW, Ratcliffe PJ, Tomlinson IP, Pollard PJ, The Journal of pathology, 2011 Sep; 225 (1)
Wright CA, Howles S, Trudgian DC, Kessler BM, Reynard JM, Noble JG, Hamdy FC, Turney BW, Molecular & cellular proteomics : MCP, 2011 Aug; 10 (8)
Raposo RA, Trudgian DC, Thomas B, van Wilgenburg B, Cowley SA, James W, Journal of immunology (Baltimore, Md. : 1950), 2011 Jul; 187 (2)
Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, The Journal of biological chemistry, 2011 Mar; 286 (9):7535-47
Related Links
Honors/Awards
Amazon AWS research credits (2011)
HUPO Travel Award (2009)
University of Exeter (2007)
University of Exeter (2001)